*denotes equal contribution | §denotes corresponding author |authors from our laboratory are in bold

DeSousa BR, Kim KO, Jones AE, Ball AB, Hsieh WY, Swain P, Morrow DH, Brownstein A, Ferrick D, Shirihai OS, Neilson A, Nathanson D, Rogers G, Drank B, Murphy A, Affourtit C, Bensinger SJ, Stiles L, Romero N, Divakaruni AS (2023) Calculation of ATP production rates using the Seahorse XF Analyzer EMBO Reports. 24(10):e56380 37548091

Yan T, Julio AR, Villanueva M, Jones AE, Ball AB, Boatner LM, Turmon AC, Nguyễn KB, Yen SL, Desai HS, Divakaruni AS, & Backus KM. (2023) Proximity-labeling chemoproteomics defines the subcellular cysteinome and inflammation-responsive mitochondrial redoxome. Cell Chemical Biology. 30(7):811-827.e7 37419112

Hazim RA, Paniagua AE, Tang L, Yang Y, Kim KKO, Stiles L, Divakaruni AS, Williams DS. (2022) Vitamin B3, nicotinamide, enhances mitochondrial metabolism to promote differentiation of the retinal pigment epithelium. Journal of Biological Chemistry. 298(9): 102286

Divakaruni AS, Jastroch M. (2022) A practical guide for the analysis, standardization and interpretation of oxygen consumption measurements. Nature Metabolism. 4, 978-994

Meriwether D, Jones AE, Ashby JW, Solorzano-Vargas RS, Dorreh N, Noori S, Grijalva V, Ball AB, Semis M, Divakaruni AS, Mack JJ, Herschman HR, Martin MG, Fogelman AM, Reddy ST (2022) Macrophage COX2 mediates efferocytosis, resolution reprogramming, and intestinal epithelial repair. Cellular and Molecular Gastroenterology and Hepatology. 13(4): 1095-1120. 35017061

Yang K, Doan MT, Stiles L, and Divakaruni AS (2021) Measuring CPT-1-mediated respiration in permeabilized cells and isolated mitochondria. STAR Protocols. 2: 100687. 34401773

Jacques V, Bolze S, Hallakou-Bozec S, Czarnik AW, Divakaruni AS, Fouqueray P, Murphy AN, Van der Ploeg LHT, and DeWitt S (2021) Deuterium-stabilized (R)-pioglitazone (PXL065) is responsible for pioglitazone efficacy in NASH yet exhibits little to no PPARγ activity. Hepatology Communications. 34430785

Jones AE, Arias NJ, Acevedo A, Reddy ST, Divakaruni AS*§, and Meriwether D*§ (2021) A single LC-MS/MS analysis to quantify CoA biosynthetic intermediates and short-chain acyl CoAs. Metabolites. 11(8): 468. 34436409

Tucci J, Chen T, Margulis K, Orgel E, Paszkiewicz RL, Cohen MD, Oberley MJ, Wahhab R, Jones AE, Divakaruni AS, Hsu CC, Noll SE, Sheng X, Zare RN, and Mittelman SD (2021) Adipocytes provide fatty acids to acute lymphoblastic leukemia cells. Frontiers in Oncology. 11: 665763. 33968771

Veliova M, Ferreira CM, Benador IY, Jones AE, Mahdaviani K, Brownstein A, Desousa BR, Acín-Pérez R, Petcherski A, Divakaruni AS, Prentki M, Corkey BE, Liesa M, Oliveira MF, and Shirihai OS (2021) Blocking mitochondrial pyruvate import causes energy wasting via futile lipid cycling in brown fat. EMBO Reports. 21(12): e49634. 33275313

Jones AE, Sheng L, Acevedo A, Veliova M, Shirihai OS, Stiles L, and Divakaruni AS (2021) Forces, fluxes, and fuels: Tracking mitochondrial metabolism by integrating measurements of membrane potential, respiration, and metabolites. AJP Cell Physiology. 320(1): C80-C91. 33147057

Krishnan KC, Floyd RR, Sabir S, Jayasekera DW, Jones AE, Cortez AA, Anum DC, Shravah V, Péterfy M, Canizales-Quinteros S, Divakaruni AS, Huertas-Vazquez A, and Lusis AJ (2021) Liver pyruvate kinase promotes NAFLD/NADH in both mice and humans in a sex-specific manner. Cellular and Molecular Gastroenterology and Hepatology. 11(2): 389-406. 32942044

Sperry J, Condro MC, Guo L, Braas D, Vanderveer-Harris N, Kim KKO, Pope WB, Divakaruni AS, Lai A, Christofk HR, Castro MG, Lowenstein PR, Le Belle JE, and Kornblum HI (2020) Metabolism of fatty acids and ketone bodies for glioblastoma growth: Implications for Ketogenic Diet Therapy. iScience. 23(9): 101453. 32861192

Hsieh WY, Zhou QD, York AG, Williams KJ, Scumpia PO, Kronenberger EB, Hoi XP, Su B, Chi X, Bui VL, Khialeeva E, Kaplan A, Son YM, Divakaruni AS, Sun J, Smale ST, Flavell RA, and Bensinger SJ (2020) Toll-like receptors induce signal-specific reprogramming of the macrophage lipidome. Cell Metabolism. S1550-4131(20): 30242-4. 32516576

Acin-Perez R, Benador IY, Petcherski A, Veliova M, Benavides GA, Lagarrigue S, Caudal A, Vergnes L, Murphy AN, Karamanlidis G, Tian R, Reue K, Wanagat J, Sacks H, Amati F, Darley-Usmar VM, Liesa M, Divakaruni AS, Stiles L, and Shirihai OS (2020) A novel approach to measure mitochondrial respiration in frozen biological samples. EMBO Journal. 39(13): e104073. 32432379

Jones AE and Divakaruni AS§ (2020) Macrophage activation as an archetype of mitochondrial repurposing. Molecular Aspects of Medicine. 71:100838. 31954522

Cao DY, Spivia WR, Veiras LC, Khan Z, Peng Z, Jones AE, Bernstein EA, Saito S, Okwan-Duodu D, Parker SJ, Giani JF, Divakaruni AS, Van Eyk JE, and Bernstein KE (2020) ACE overexpression in myeloid cells increases oxidative metabolism and cellular ATP. Journal of Biological Chemistry. 295(5):1369-1384. 31871049

Divakaruni AS§ and Murphy AN§ (2020) Do two mitochondrial wrongs help make cells right? Trends in Molecular Medicine. 26(1) :3-6. 31813762

Raud B, Roy DG, Divakaruni AS, Tarasenko TN, Franke R, Ma EH, Samborska B, Hsieh WY, Wong AH, Stüve P, Arnold-Schrauf C, Guderian M, Lochner M, Rampertaap S, Romito K, Monsale J, Brönstrup M, Bensinger SJ, Murphy AN, McGuire PJ, Jones RG, Sparwasser T, and Berod L (2018) Etomoxir actions on regulatory and memory T Cells are independent of Cpt1a-mediated fatty acid oxidation. Cell Metabolism. 28(3):504-15. 30043753

Divakaruni AS*§, Hsieh WY*, Minarrieta L, Duong TN, Kim KKO, Desousa BR, Andreyev AY, Bowman CE, Caradonna K, Dranka BP, Ferrick DA, Liesa M, Stiles L, Rogers GW, Braas D, Ciaraldi TP, Wolfgang MJ, Sparwasser T, Berod L, Bensinger SJ, and Murphy AN (2018) Etomoxir inhibits macrophage polarization by disrupting CoA homeostasis. Cell Metabolism. 28(3):490-503. 30043752

Divakaruni AS§, Andreyev AY, Rogers GW, and Murphy AN (2018) In situ measurements of mitochondrial matrix enzyme activities using plasma and mitochondrial membrane permeabilization agents. Analytical Biochemistry. 552:60-65. 28987935